Instructions & Templates to Submit Jobs on HPC Cluster
General Information
First-time users (FAQ) start here
Registration form for new user
Service Model
Hardware of the clusters
Current system and applications installed
Policy and allocation of resources
Instructions for job submission
Consulting with our joint IT-Scientist team for other services
Instructions for job submission
How to setup your working enviroment
How to submit jobs
How to monitor your jobs
How to modify your pending jobs
How to terminate your jobs
How to run massive or complicated serial job array
How to run interactive jobs
How to run your MPI program (Message Passing Interface)
How to run matlab
How to run gcc4.2/openMP job
How to use Intel compiler in the cluster
How to use Intel Math Kernel in the cluster
How to use GNU Scientific Library in the cluster
How to run R or RMPI job
How to run NCBI blast and its variants
How to run UCSC blat
How to run eHiTS (The protein-ligand docking application)
How to run NAMD (The molecular dynamic simulation application)
( Note: Parallel charmm is installed on rescluster2, please ask us for instruction)
Note:
We are updating various documentation based on our user's experience and will post it online soon. In brief, you need to pay attention to the following:
1> Please run small jobs before you run large jobs. To allocate a large amount of resources, always test your software/program first!
2> If you have emergency jobs that need to be run, please contact us and we can make a temporary adjustment.
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