Instructions & Templates to Submit Jobs on HPC Clusters
General Information
First-time users (FAQ) start here
Registration form for new user
Service Model
Hardware of the clusters
Current system and applications installed
Policy and allocation of resources
Consulting with our joint IT-Scientist team for other services
Instructions for job submission in Linux cluster
How to setup your working enviroment
How to submit jobs
How to monitor your jobs
How to modify your pending jobs
How to terminate your jobs
How to run massive or complicated serial job array
How to run interactive jobs
How to run your MPI program (mpich1.x, or HP-MPI)
How to run your MPICH2 MPI program
How to run matlab
How to run gcc4.2/openMP job
How to run R or RMPI job
How to use Intel compiler in the cluster
How to use Intel Math Kernel in the cluster
How to use GNU Scientific Library in the cluster
How to run NCBI blast and its variants
How to run UCSC blat
How to run eHiTS (A protein-ligand docking application)
How to run Dock6 (A protein-ligand docking application)
How to run NAMD (The molecular dynamic simulation application)
( Note: Parallel charmm is installed on rescluster2, please ask us for instruction)
Instructions for job submission in Windows cluster
How to setup your working enviroment to access Windows cluster
How to submit a batch job to windows cluster
How to monitor your jobs in windows cluster
How to cancel your jobs in windows cluster
How to submit many batch jobs with parametric sweep
How to programatically submit many batch jobs in windows cluster
How to submit a MPI C job to windows cluster
How to submit a MPI NET job to windows cluster
How to submit computing job to Windows cluster via WCF (Windows Communication Foundation) (you can engage the Windows cluster from other SOA type of applications in PHS network)
How to submit perl job to windows cluster
How to submit R job to windows cluster
How to submit interactive matlab parallel job to windows cluster new!
More samples related to scientific applications will be published here later....
Instructions for using specific HPC applications
How to use StarP to run parallel Matlab and Python
Note:
1> Please run small jobs before you run large jobs. To allocate a large amount of resources, always test your software/program first!
2> If you have emergency jobs that need to be run, please contact us and we can make a temporary adjustment.
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